| 2008 |
1.
De-la-Pena, C., Badri, D.V., and Vivanco, J.M. (2008)
Novel role for pectin methylerase in Arabidopsis:
a new function showing ribosome-inactivating protein
(RIP) activity. Biochemica et Biophysica Acta, 1780:
773-783 (Please contact us directly for a reprint)
2.
Broeckling, C.D., Broz, A.K., Bergelson, J., Manter,
D.K., and Vivanco, J.M. (2008) Root exudates regulate
soil fungal community composition and diversity. Appl.
Environ. Microbiol. 74: 738-744
3.
Vivanco, J.M., and Rubio, G. (2008) For the love of
roots and rhizosphere: a book review of The rhizosphere:
an ecological perspective. Ecology
89(2): 590-591
4.
Ridenour, W.M., Vivanco, J.M., Feng, Y., Horiuchi,
J., and Callaway, R.M. (2008) No simple tradeoffs:
invasive Centaurea is a superior competitor and a
superior defender. Ecology (in press)
5.
Badri, D.V., Loyola-Vargas, V.M., Broeckling, C.D.,
De-la-Pena, C., Jasinski, M., Santelia, D., Martinoia,
E., Sumner, L.W., Banta, L.M., Stermitz, F., and Vivanco,
J.M. (2008) Altered profile of secondary metabolites
in the root exudates of Arabidopsis ATP-Binding Cassette
(ABC) transporter mutants. Plant Physiology 146:762-771
6.
Broeckling, C.D., and Vivanco, J.M. (2008) A selective,
sensitive, and rapid in-field assay for soil catechin,
an allelochemical of Centaurea maculosa.
Soil
Biology and Biochemistry 40: 1189-1196
7.
Badri, D.V, Loyola-Vargas, V.M., Du, J., Stermitz,
F.R., Broeckling, C.D., Iglesias-Andreu, L., and Vivanco,
J.M. (2008) Transcriptome analysis of Arabidopsis
roots treated with signaling compounds: a focus on
signal transduction, metabolic regulation and secretion.
New
Phytologist in press
8.
Simoes, K., Du, J., Kretzschmar, F.S., Broeckling,
C.D., Stermitz, F.S., Vivanco, J.M., and Braga, M.R.
(2008) Phytotoxic catechin leached by seeds of the
tropical weed Sesbania virgata. J
Chem Ecol 34:681-687
|
| 2007 |
1.Prithiviraj,
B., Perry, L.G., Badri, D., Vivanco, J.M. (2007) Chemical
facilitation and induced pathogen resistance mediated
by a root-secreted phytotoxin. New
Phytologist 173: 852-860
2.
Loyola-Vargas, V.M., Broeckling, C.D., Badri, D., and
Vivanco, J.M. (2007) Effect of transporters on the secretion
of phytochemicals by the roots of Arabidopsis thaliana.
Planta
225: 301-310
3.
Prithiviraj, B., Paschke, M.W., and Vivanco, J.M. (2007).
Root communication: the role of root exudates. Encyclopedia
of Plant and Crop Science 1:1, 1-4 DOI: 10.1081/E-EPCS-120042072
4.
Horiuchi, J., Badri, D. V., Kimball, B.A., Negre, F.,
Dudareva, N., Paschke, M.P., and Vivanco, J.M. (2007)
The floral volatile, methyl benzoate, from snapdragon
(Antirrhinum majus) triggers phytotoxic effects
in Arabidopsis thaliana. Planta
DOI 10.1007/s00425-006-0464-0
5. Alford,
E.R., Perry, L.G., Qin, B., Vivanco, J.M., and Pashcke,
M.W. (2007) A putative allelopathic agent of Russian
knapweed occurs in invaded soils. Soil Biology and Biochemistry
39: 1812-1815
6.
Broz, A.K., Broeckling, C.D., He, J., Dai, X., Zhao,
P.X., and Vivanco, J.M. (2007) A first step in understanding
an invasive weed through its genes: an EST analysis
of invasive Centaurea maculosa. BMC
Plant Biology 7:25 doi:10.1186/1471-2229/7/25
7.
Perry, L.G, Alford, E.R., Horiuchi, J., Paschke, M.W.,
Vivanco, J.M. (2007). Chemical signals in the rhizosphere:
root-root and root-microbe communication. In The
Rhizosphere (Second Edition). Pinton, R., Varanini,
Z. and P. Nannipieri, eds. CRC Press. Boca Raton, FL.
pp.
297-330
8.
Weir, T.L. (2007) The role of allelopathy and mycorrhizal
associations in biological invasions. Allelopathy
Journal 20 (1): 43-50
9.
Manter, D.K., and Vivanco, J.M. (2007) Use of the ITS
primers, ITS1F and ITS4, to characterize fungal abundance
and diversity in mixed-template samples by qPCR and
length heterogeneity analysis. J
Microbiological Methods 71:7-14
10.
Broz, A.K., D.K. Manter, and Vivanco, J.M. (2007, in
press) Soil fungal abundance and biodiversity: another
victim of the invasive plant Centaurea maculosa.
ISME
Journal 1 (8): 763-765
11.
Qin, B., Lau J.A., Kopshever, J., Callaway, R.M., McGray,
H., Perry, L.G., Weir, T.L., Paschke, M.W., Hierro,
J.L., Yoder, J., Vivanco J.M., and Strauss, S. (2007)
No evidence for root-mediated allelopathy in Centaurea
solstitialis, a species in a commonly allelopathic
genus. Biological
Invasions 9:897-907
12.
Badri, D.V., Loyola-Vargas, J.M., Broeckling, C.D.,
De-la-Pena, C., Jasinski, M., Santelia, D., Martinoia,
E., Sumner, L.W., Banta, L.M., Stermitz, F., and Vivanco,
J.M. (2007) Altered profile of secondary metabolites
in the root exudates of Arabidopsis ATP-Binding Cassette
(ABC) transporter mutants. Plant
Physiology (in press)
13.
Perry, L.C., Thelen, G.C., Ridenour, W.M., Callaway,
R.M., Pashcke, M.W., and Vivanco, J.M. (2007) Concentrations
of the allelochemical (+/-)-catechin in Centaurea
maculosa soils. J
Chem Ecol 33: 2337-2344 |
|
| 2006 |
|
1.
Weir, T.L., Bais, H.P., Stull, V. J., Callaway, R. M.,
Thelen, G. C., Ridenour, W. M., Bhamidi, S., Stermitz,
F.R., and Vivanco, J.M. (2006) Oxalate contributes to
the resistance of Gaillardia grandiflora and
Lupinus sericeus to a phytotoxin produced by
Centaurea maculosa. Planta
223: 785-795
2.
Weir,
T.L., Perry, L.G., and Vivanco, J.M. (2006) Phytoxins
produced by invasive weeds and their applications in
agriculture and the restoration of natural areas. In
Natural Products for Pest Management (Rimando,
A. M. and S.O. Duke, eds.). Symposium Series No. 927.
Washington, D.C.: American Chemical Society, pp
99-112
3.
Perry, L.G., Weir, T.L., Prithiviraj, B., Paschke, M.W.
and Vivanco, J.M. (2006) Root exudation and rhizosphere
biology: multiple functions of a plant secondary metabolite.
In Communication in Plants (F. Baluska, S.
Manuska, and D. Volkmann, eds.) Berlin,
Heidelberg: Springer-Verlag, pp. 403-420
4.
Barbieri, L., Polito, L., Bolognesi, A., Ciani, M.,
Pelosi, E., Farini, V., Jha, A., Sharma, N., Vivanco,
J.M., Chambery, A., Parente, A., and Stirpe, F. (2006).
Ribosome-inactivating proteins in edible plants and
purification and characterization of a new ribosome-inactivating
protein from Cucurbita moschata. Biochim
Biophys Acta 1760:783-792
5.
Bais, H.P., Weir, T.L., Perry, L.G., Gilroy, S., and
Vivanco, J.M. (2006) The role of root exudates in rhizosphere
interactions with plants and other organisms. Annu.
Rev. Plant Biol. 57:233-266
6.
Park S.-W., Prithiviraj, B., Vepachedu, R., and Vivanco,
J.M. (2006) Isolation and purification of ribosome-inactivating
proteins. In Plant Tissue Culture Protocols
(V.M. Loyola-Vargas and F.A. Vazquez-Flota, eds.) Totowa,
NJ: Humana Press, pp
335-347
7.
Brenner, E.D., Stahlberg, R., Mancuso, S., Vivanco,
J.M., Baluska, F., Van Volkenburgh, E. (2006) Plant
neurobiology: an integrated view of plant signaling.
Trends
in Plant Science 11:413-419
8.
Inderjit, Callaway, R.M., and Vivanco, J.M. (2006) Can
plant biochemistry contribute to understanding of invasion
ecology? Trends
in Plant Sciences 11:574-580
9.
Qin, B., Perry, L.G., Broeckling, C.D., Du, J., Stermitz,
F., Paschke, M.W., and Vivanco, J.M. (2006) Phytotoxic
allelochemicals from roots and root exudates of leafy
spurge (Euphorbia esula L.). Plant
Signaling and Behavior 1: 323-327
10.
Broz, A.K., Schultz, M.J., Perry, L.G., Paschke, M.W.,
Vivanco, J.M. (2006) Secondary metabolites and allelopathy
in plant invasions: A case study of Centaurea maculosa.
Essay 13.7 in A
Companion to Plant Physiology, Fourth Edition online,
L. Taiz and E. Zeiger. Sinauer Associates, Inc.
|
|
| 2005 |
1.
Bais,
H.P.,Prithiviraj, B., Jha, A.K., Ausubel, F.M., and
Vivanco, J.M. (2005) Mediation of pathogen resistance
by exudation of antimicrobials from roots.
Nature 434: 217-221
2.
Prithiviraj, B., Weir, T., Bais, H.P., Schweizer, H.P.,
and Vivanco, J.M. (2005) Plant models for animal pathogenesis.
Cellular
Microbiology 7:315-324
3.
Thelen, G.C., Vivanco, J. M., Newingham, B., Good, W.,
Bais, H.P., Landres, P., Caesar, A., and Callaway, R.M.
(2005) Insect herbivory stimulates allelopathic exudation
by an invasive plant and the suppression of natives.
Ecology
Letters 8: 209-217
4.
Jha, A.K., Bais, H.P., and Vivanco, J.M. (2005) Enterococcus
faecalis Mammalian Virulence-Related Factors Exhibit
Potent Pathogenicity in the Arabidopsis thaliana
plant model. Infection
and Immunity 73: 464-475
5.
Vivanco, J.M., Cosio, E., Loyola-Vargas, V.M., and Flores,
H.E. (2005) Los mecanismos quimicos de defensa en las
plantas. Investigación
y Ciencia [Scientific American Latinoamerica] 341:68-75217
6.
Vepachedu, R., Park, S.W., Sharma, N., and Vivanco,
J.M. (2005) Bacterial expression and enzymatic activity
analysis of ME1, a ribosome-inactivating protein from
Mirabilis expansa. Protein
Expression and Purification 40: 142-151
7.
Prithiviraj, B., Bais, H.P., Jha, A.K., and Vivanco,
J.M. (2005) Staphylococcus aureus pathogenicity
on Arabidopsis thaliana is mediated either
by a direct effect of salicylic acid on the pathogen
or by SA-dependent, NPR1-independent host responses.
The
Plant Journal 42:417-432
8.
Hompesch, R.W., Garcia, C.D., Weiss, D.J., Vivanco,
J.M., and Henry, C.S. (2005) Analysis of natural flavonoids
by microchip-micellar electrokinetic chromatography
with pulsed amperometric detection. The
Analyst 130: 694-700
9.
Callaway, R.M., Ridenour, W.M., LaBoski, T., Weir, T.,
and Vivanco, J.M. (2005) Natural Selection for resistance
to the allelopathic effects of invasive plants. Journal
of Ecology 93:576-583
10.
Horiuchi, J., Prithiviraj, B., Bais, H.B., Kimball,
B.A., and Vivanco, J.M. (2005) Soil nematodes mediate
positive interactions between legume plants and rhizobium
bacteria. Planta
222:848-857
11.
Prithiviraj, B., Bais, H.P., Weir, T., Suresh, B., Najarro,
E.H., Dayakar, B.V., Schweitzer, H.P., and Vivanco,
J.M. (2005) Down Regulation of Virulence Factors of
Pseudomonas aeruginosa by Salicyclic Acid Attenuates
Its Virulence on Arabidopsis thaliana and Caenorhabditis
elegans. Infection
and Immunity 73: 5319-5328
12.
Park S.-W., Prithiviraj, B., Vepachedu, R., and Vivanco,
J.M. (2005) Isolation and purification of ribosome-inactivating
proteins. In Plant Tissue Culture Protocols
(V.M. Loyola-Vargas and F.A. Vazquez-Flota, eds.) Totowa,
NJ: Humana Press, pp 335-347
13.
Callaway, R.M., and Vivanco, J.M. (2005) Invasion of
plants into native communities using the underground
information superhighway. In Proceedings
of the 4th World Congress on Allelopathy. JDI Harper,
M An, H Wu and JH Kent, eds. Charles Stuart University,
Wagga Wagga, NSW, Australia. August 2005. International
Allelopathy Society, pp. 50-56
14.
Callaway, R.M., Bais, H.P, Weir, T.L., Perry, L., Ridenour,
W.M., and Vivanco, J.M. (2005) Allelopathy and exotic
plant invasion: from genes to communities: synopsis,
updates, and implications. In Proceedings
of the 4th World Congress on Allelopathy. JDI Harper,
M An, H Wu and JH Kent, eds. Charles Stuart University,
Wagga Wagga, NSW, Australia. August 2005. International
Allelopathy Society, pp 33-38
15.
Perry, L.G., Thelen, G.C., Ridenour, W.M., Weir, T.L.,
Callaway, R.M., Paschke, M.W., and Vivanco, J.M. (2005)
Dual role for an allelochemical: (+/-)-catechin from
Centaurea maculosa root exudates regulates
conspecific seedling establishment. Journal
of Ecology 93:1126-1135
|
|
| 2004 |
1. Bais,
H.P., Park, S.W., Weir, T.L. Callaway, R.M.,and Vivanco,
J.M.(2004) How plants communicate using the underground
information superhighway. Trends
in Plant Science 9:26-32
2. Sharma,
N., Park, S. W., Vepachedu, R., Barbieri, L., Ciani,
M., Stirpe, F, Savary, B.J., and Vivanco, J.M.
(2004) Isolation and characterization
of an RIP-like protein from Nicotiana tabacum with
dual enzymatic activity. Plant
Physiology 134:171-181
3. Steeghs,
M., Bais, H.P., de Gouw, J., Goldan, P., Kuster, W.,
Northway, M., Fall, R., and Vivanco, J.M. (2004)
Proton-transfer-reaction
mass spectrometry (PTR–MS) as a new tool for real time
analysis of root-secreted volatile organic compounds
(VOCs) in Arabidopsis thaliana.
Plant
Physiology 135:47-58
4. Sharma,
N., Gruszewski, H.A., Park, S-W., Holm, D.G., and Vivanco,
J.M. (2004) Purification and characterization
of an isoform of patatin from late blight-resistant
potatoes with antimicrobial activity against Phytophthora infestans.
Plant
Physiology and Biochemistry 42: 647-655
5. Vivanco,
J.M., Bais, H.P., Stermitz, F.R, and Callaway, RM
(2004) Root allelochemistry
strongly contributes to Centaurea diffusa invasive
behavior. Ecology
Letters 7:285-292
6.
Veluri, R., Weir, T.L., Bais, H.P., Stermitz, F.R.,
and Vivanco, J.M. (2004) Phytotoxic and antimicrobial
activities of catechin derivatives. Journal
of Agricultural and Food Chemistry 52:1077-1082
7.
Bais, H.P., Fall, R., and Vivanco, J.M. (2004) Biocontrol
efficiency of Bacillus subtilis (6051) against
Pseudomonas syringae (DC3000) in Arabidopsis
thaliana roots is facilitated by biofilm formation
and surfactin production. Plant Physiology 134: 307-319
8. Park,
S-W., Vepachedu, R., Owens, R.A., and Vivanco, J.M.
(2004) The N-glycosidase activity
of the ribosome-inactivating protein ME1 targets single-stranded
regions of nucleic acids independent of sequence or
structural motifs. The
Journal of Biological Chemistry 279: 34165-34174
9. Weir,
T., Park, S-W., and Vivanco, J.M. (2004) Biochemical and physiological
mechanisms mediated by allelochemicals. Current
Opinion in Plant Biology 7:472-479
10. Walker,
T.S., Bais, H.P., Déziel E., Schweizer H.P., Rahme L.G.,
Fall R., and Vivanco, J.M. (2004) Pseudomonas aeruginosa-plant
root interactions: pathogenicity, biofilm formation
and root exudation. Plant
Physiology 134:320-331
11. Park,
S.-W., Vepachedu, R., Sharma, N., and Vivanco, J.M.
(2004) Ribosome-inactivating
proteins in plant biology. Planta
219:1093-1096
|
|
| 2003 |
1.
Weir,
T.L., Bais, H.P., and Vivanco, J.M. Intraspecific
and interspecific interactions mediated by a phytotoxin,
(-)-catechin, secreted by the roots of Centaurea
maculosa (spotted
knapweed). Journal
of Chemical Ecology 29: 2397-2412
2.
Javanmardi,
J., Stushnoff, C., Locke, E., and Vivanco, J.M.
(2003) Antioxidant
activity and total phenolic content of Iranian Ocimum
accessions. Food
Chemistry 83:547-550
3.
Bais,
H.P., Vepachedu, R., Gilroy, S., Callaway, R.M., and
Vivanco, J.M. (2003) Allelopathy and exotic plant
invasion: from molecules and genes to species interactions.
Science
301:1377-1380
4.
Stermitz,
F.R., Bais, H.P., Foderaro, T.A., and Vivanco, J.M.
(2003) 7,8-Benzoflavone: a phytotoxin from root exudates
of invasive Russian knapweed.
Phytochemistry
64:493-497 (Memorial Issue for J. B. Harborne)
5.
Bais,
H.P., Vepachedu, R., Lawrence, C.B., Stermitz, F.R.,
and Vivanco, J.M. (2003) Molecular and biochemical
characterization of an enzyme responsible for the formation
of hypericin in St. John's wort (Hypericum perforatum
L.). Journal
of Biological Chemistry 278:32413-32422
6.
Vepachedu,
R., Bais, H.P., and Vivanco J.M. (2003) Cloning,
characterization and induction of MEC, a type I ribosome-inactivating
protein from Mirabilis
expansa. Planta
217:498-506
7.
Bais,
H.P., Vepachedu, R., Vivanco, J.M. (2003) Root
specific elicitation and exudation of fluorescent b-carbolines
in transformed root cultures of Oca (Oxalis
tuberosa L.).
Plant Physiology & Biochemistry 41:
345-353
8. Walker,
T.S., Bais, H.P., Grotewold, E., and Vivanco, J.M.
(2003) Root exudation and rhizosphere biology.
Plant
Physiology 132:44-51
9.
Okemo, P.O., Bais, H.P. and Vivanco, J.M.
(2003)
In vitro antifungal activity of Maesa
lanceolata extracts against plant pathogens.
Fitoterapia
74:312 – 316
10.
Flores,
H.E., Walker, T.S., Guimaraes, R., Bais, H.P., and Vivanco,
J.M. (2003) Underground Rainbows: Andean Root and
Tuber Crops.
HortScience 38:161-167
11.
Vivanco,
J.M.,
and Tumer, N. (2003). Translation
inhibition of capped and uncapped viral RNAs mediated
by ribosome-inactivating proteins.
Phytopathology 93:588-595
12.
Walker,
T.S., Bais, H.P., Halligen, K.M., Stermitz, F.R., and
Vivanco, J.M. (2003) Metabolic profiling of non-polar
compounds in root exudates of Arabidopsis thaliana
in vitro; study of dynamic interface for the
comprehensive characterization of rhizopsheric interactions.
Journal of Agricultural and Food Chemistry 51:2548-2554
13.
Bais,
H.P., Walker, T.S., Kennan, A.J., Stermitz, F.R., Vivanco,
J.M. (2003) Structure-dependent
phytotoxicity of catechins and other flavonoids; flavonoid
conversions by cell-free protein extracts of Centaurea
maculosa (spotted knapweed) roots.
Journal
of Agricultural and Food Chemistry 51: 897-901
14.
Park,
S-W., Linden, J.C., and Vivanco, J.M. (2003)
Ethylene induced secretion of a ribosome inactivating
protein from roots and hairy root cultures of Phytolacca
americana.
In Biology and Biotechnology of the Plant
Hormone Ethylene III.
M. Vendrell, H. Klee, J.C. Pech, F. Romojaro,
eds. IOS
Press, Nato Science Series, pp 170-174
|
|
| 2002 |
1.
Javanmardi,
J., Khalighi, A., Kashi, A., Bais, H.P. and Vivanco,
J.M. (2002)
Chemical characterization of basil (Ocimum
basilicum L.) found in local accessions and used
in traditional medicines in Iran.
Journal
of Agricultural and Food Chemistry 50: 5878-5883
2.
Bais,
H.P., Park, S-W, Halligan, K.M., Stermitz, F.R. and
Vivanco, J.M. (2002) Exudation of fluorescent
β-carbolines from Oxalis tuberosa L. roots.
Phytochemistry 61:539-543
3.
Park, S-W., Stevens, N. and Vivanco, J.M.
(2002) Enzymatic
specificity of three ribosome-inactivating proteins
against fungal ribosomes, and correlation with antifungal
activity. Planta
216:227-234
4.
Park, S-W., Lawrence, C.B., Linden, J.C. and
Vivanco, J.M. (2002) Isolation and characterization
of a novel ribosome-inactivating protein from root cultures
of pokeweed and its mechanism of secretion from roots.
Plant Physiology 130:164-178
5.
Bais,
H.P., Walker, T.S. Schweizer, H. and Vivanco, J.M.
(2002) Root specific elicitation and antimicrobial activity
of rosmarinic acid in hairy root cultures of sweet basil
(Ocimum basilicum L.).
Plant Physiology & Biochemistry 40: 983-995.
This research was featured in the cover of
the journal.
6.
Walker, T.S, Bais, H.P. and Vivanco, J.M.
(2002) Jasmonic acid-induced hypericin production in
cell suspension cultures of Hypericum perforatum
L. (St. Johns Wort).
Phytochemistry 60:289-293
7.
Bais, H.P, Walker, T.S., Stermitz, F.R., Hufbauer,
R.A. and Vivanco, J.M. 2002. Enantiomeric dependent
phytotoxic and antimicrobial activity of (±)-catechin;
a rhizosecreted racemic mixture from Centaurea maculosa
(spotted knapweed).
Plant
Physiology 128: 1173-1179
8.
Bais, H.P., Walker, T.S., McGrew, J.J. and Vivanco,
J.M. 2002.
Cell size aggregation and dark conditions influence
growth and production of hypericin in cell suspension
cultures of Hypericum perforatum L. (St. John’s
Wort).
In Vitro Cell. Dev.-PLANT 38: 58-65
9.
Bais, H.P,
Green, J.B., Walker, T.S., Okemo, P.O. and Vivanco,
J.M. (2002) In vitro propagation of Spilanthes
mauritiana DC., an endangered medicinal herb, through
axillary bud cultures. In
Vitro Cell. Dev. Biol.-PLANT 38: 598-601
10.
Vivanco,
J.M., Guimaraes,
R. and Flores, H.E. (2002).
Underground Plant Metabolism: The Biosynthetic
Potential of Plant Roots.
In Plant Roots the Hidden Half.
Y. Waisel, A. Eshel, U. Kafkafi, eds.
Marcel Dekker Press, New York, pp 1045-1070.
|
|
| 2001 and before |
| 1. Bais,
H.P., Loyola-Vargas, V.M., Flores, H.E. and Vivanco,
J.M. (2001).
Root-specific metabolism: the biology and
biochemistry of underground organs.
In Vitro Cell. Dev.-PLANT 37: 730-741 |
|
|
|
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